Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_285

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8652 and 8653 are separated by 339 nucleotides8653 and 8654 are separated by 728 nucleotides mRNA_284: 8652 - K01762 ACS 1-aminocyclopropane-1-carboxylate synthase, at 676,013 to 677,803 8652 mRNA_285: 8653 - Hypothetical Protein, at 678,143 to 678,782 8653 mRNA_286: 8654 - SUPERFAMILY--SSF52047, at 679,511 to 681,745 8654

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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677,504 + 8652 mRNA_284 0.83 -0.1
677,825 + -0.0
677,941 - -0.2
678,002 + +0.9
678,014 + -0.7
678,124 - -0.3
678,127 - -0.2
678,139 - +0.5
678,276 + 8653 mRNA_285 0.21 +2.0
678,279 - 8653 mRNA_285 0.21 +1.5
679,435 + -0.1
679,620 + +0.2
679,771 + 8654 mRNA_286 0.12 +1.2
679,772 - 8654 mRNA_286 0.12 +2.8

Or see this region's nucleotide sequence