Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_309

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8676 and 8677 are separated by 273 nucleotides8677 and 8678 are separated by 220 nucleotides mRNA_308: 8676 - K07952 ARFRP1 ADP-ribosylation factor related protein 1, at 730,823 to 731,905 8676 mRNA_309: 8677 - K00643 E2.3.1.37, ALAS 5-aminolevulinate synthase, at 732,179 to 734,206 8677 mRNA_310: 8678 - K00626 E2.3.1.9, atoB acetyl-CoA C-acetyltransferase, at 734,427 to 736,325 8678

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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731,214 - 8676 mRNA_308 0.36 +0.1
731,350 - 8676 mRNA_308 0.49 +1.1
731,353 - 8676 mRNA_308 0.49 -1.0
731,372 + 8676 mRNA_308 0.51 +0.3
731,807 - +0.0
731,814 + +1.8
731,975 - +1.3
731,978 + -1.1
732,094 - +0.5
732,095 - -1.2
732,095 - +1.0
732,096 - +0.5
732,096 + -0.9
732,106 - -0.1
732,108 + -0.3
732,111 + +1.9
732,138 + -0.2
732,142 - +2.1
732,367 - +0.0
734,170 + -0.0
734,210 + -0.2
734,304 + +1.3
734,319 - -1.4
734,319 + +0.6
734,329 - -0.2
734,338 + +0.1
734,339 + +0.8
734,339 - +0.3
734,355 + -0.3
734,359 + +0.3
734,360 + +0.2
734,368 - -0.0
734,460 + +0.8
734,491 + +2.9
734,501 - +0.2
734,503 + -0.6
734,504 - +1.3
734,514 - +1.6
734,514 + +1.0
734,519 + -0.9
735,101 + 8678 mRNA_310 0.35 +0.4

Or see this region's nucleotide sequence