Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_322

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8689 and 8690 are separated by 175 nucleotides8690 and 8691 are separated by 518 nucleotides mRNA_321: 8689 - KOG4317 Predicted Zn-finger protein, at 762,839 to 764,616 8689 mRNA_322: 8690 - Hypothetical Protein, at 764,792 to 765,740 8690 mRNA_323: 8691 - Hypothetical Protein, at 766,259 to 767,210 8691

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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764,577 + +1.0
764,585 - +0.8
764,868 + -0.5
765,025 + 8690 mRNA_322 0.25 -1.7
765,286 - 8690 mRNA_322 0.52 -0.2
765,740 + -0.9
766,372 + 8691 mRNA_323 0.12 +0.0
766,499 + 8691 mRNA_323 0.25 +0.5

Or see this region's nucleotide sequence