Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_327

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8694 and 8695 are separated by 226 nucleotides8695 and 8696 are separated by 264 nucleotides mRNA_326: 8694 - K17983 SHE9 sensitive to high expression protein 9, mitochondrial, at 776,267 to 777,781 8694 mRNA_327: 8695 - KOG0378 40S ribosomal protein S4, at 778,008 to 779,249 8695 mRNA_328: 8696 - K02987 RP-S4e, RPS4 small subunit ribosomal protein S4e, at 779,514 to 780,910 8696

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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777,052 + 8694 mRNA_326 0.52 +0.3
777,187 - 8694 mRNA_326 0.61 -1.9
777,189 + 8694 mRNA_326 0.61 -0.4
777,335 + 8694 mRNA_326 0.70 -0.9
777,617 + 8694 mRNA_326 0.89 +1.0
777,627 + 8694 mRNA_326 0.90 +0.0
777,790 + +0.1
777,798 + -0.3
777,814 + +0.1
777,819 + -2.5
777,840 + +0.7
778,699 - 8695 mRNA_327 0.56 +2.0
778,851 + 8695 mRNA_327 0.68 +1.9
778,993 - 8695 mRNA_327 0.79 +0.2
779,144 - -0.1
779,145 - +0.9
779,275 - +0.0
779,286 - +0.2
779,308 + +0.6
779,308 + +1.2
779,347 + +0.0

Or see this region's nucleotide sequence