Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_352

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8719 and 8720 are separated by 505 nucleotides8720 and 8721 are separated by 153 nucleotides mRNA_351: 8719 - BLAST carbohydrate-binding module family 13 protein [Rhizoc..., at 821,227 to 823,466 8719 mRNA_352: 8720 - K14298 RAE1, GLE2 mRNA export factor, at 823,972 to 825,872 8720 mRNA_353: 8721 - K02258 COX11 cytochrome c oxidase assembly protein subunit 11, at 826,026 to 827,001 8721

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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823,502 - +0.3
823,571 - +1.4
823,796 - +0.4
823,838 - +0.6
823,981 - +0.3
823,984 + +1.8
826,019 + -0.3
826,079 + -1.4

Or see this region's nucleotide sequence