Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_355

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8722 and 8723 are separated by 312 nucleotides8723 and 8724 are separated by 701 nucleotides mRNA_354: 8722 - K17583 NOM1 nucleolar MIF4G domain-containing protein 1, at 827,130 to 830,488 8722 mRNA_355: 8723 - Hypothetical Protein, at 830,801 to 831,631 8723 mRNA_356: 8724 - K02727 PSMA3 20S proteasome subunit alpha 7, at 832,333 to 833,691 8724

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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830,525 + +0.2
830,544 + -0.3
830,555 - +0.3
830,682 + +0.7
830,693 + +1.4
830,717 + +1.7
830,729 - -0.1
831,108 - 8723 mRNA_355 0.37 +1.1
831,277 + 8723 mRNA_355 0.57 +0.6
831,285 - 8723 mRNA_355 0.58 +0.2
831,601 + -1.0
831,607 - +0.8
831,740 - +0.6
831,752 - +0.1
831,754 - +1.2
831,770 - +0.5
831,771 + +0.4
831,789 + +0.3
831,922 - +0.9
831,927 - +0.2
831,929 - +2.1
831,932 + +1.5
831,936 + -0.6
831,938 - +0.0
831,939 - +1.4
831,961 + -0.2
832,001 - +0.1
832,012 - -0.3
832,080 - -3.1
832,199 - +0.5
832,356 + +0.5

Or see this region's nucleotide sequence