Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_412

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8779 and 8780 are separated by 688 nucleotides8780 and 8781 are separated by 96 nucleotides mRNA_411: 8779 - K12862 PLRG1, PRL1, PRP46 pleiotropic regulator 1, at 962,864 to 964,890 8779 mRNA_412: 8780 - Hypothetical Protein, at 965,579 to 965,773 8780 mRNA_413: 8781 - K00227 SC5DL, ERG3 Delta7-sterol 5-desaturase, at 965,870 to 967,292 8781

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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964,953 + +0.3
964,954 + -0.1
964,960 + +0.7
965,167 - +0.3
965,201 - +0.2
965,315 + -0.7
965,355 + +1.2
965,360 - -0.6
965,364 + +0.5
965,369 + +0.1
965,374 + -0.1
965,375 + +1.7
965,376 + -0.2
965,378 + -0.0
965,381 + +0.3
965,382 + -0.3
965,386 + -0.2
965,390 - +0.5
965,392 - -0.1
965,395 - +1.2
965,396 + +2.2
965,396 - +0.1
965,405 + +0.6
965,410 - -1.2
965,418 - -0.2
965,429 + +1.4
965,778 + +0.0
966,155 + 8781 mRNA_413 0.20 -0.8

Or see this region's nucleotide sequence