Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_415

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8782 and 8783 are separated by 373 nucleotides8783 and 8784 are separated by 270 nucleotides mRNA_414: 8782 - KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes, at 967,662 to 968,667 8782 mRNA_415: 8783 - K03511 POLK DNA polymerase kappa, at 969,041 to 971,775 8783 mRNA_416: 8784 - Hypothetical Protein, at 972,046 to 973,465 8784

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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968,435 - 8782 mRNA_414 0.77 +0.1
968,435 + 8782 mRNA_414 0.77 -0.2
968,437 - 8782 mRNA_414 0.77 +1.0
968,447 - 8782 mRNA_414 0.78 +0.5
968,448 - 8782 mRNA_414 0.78 -0.6
968,455 + 8782 mRNA_414 0.79 +1.0
968,459 + 8782 mRNA_414 0.79 +0.8
968,606 + -1.0
968,643 - +1.3
968,740 - +0.2
968,741 - -0.8
968,749 - -1.1
968,763 + +0.3
968,768 - +0.8
968,769 + +2.0
968,777 + +0.0
968,782 + +0.6
968,790 - +1.2
968,796 - -0.0
968,797 - -0.6
968,797 - +1.9
968,803 + +0.7
968,812 - +0.1
968,813 + -0.5
968,813 + +2.0
968,849 + -0.8
968,863 + -1.4
968,869 + -1.1
968,949 - +0.2
969,325 + 8783 mRNA_415 0.10 +0.6
969,524 - 8783 mRNA_415 0.18 -0.2
969,536 + 8783 mRNA_415 0.18 -1.0
969,676 + 8783 mRNA_415 0.23 +0.6
969,796 + 8783 mRNA_415 0.28 -1.3
969,970 - 8783 mRNA_415 0.34 -1.6
970,085 + 8783 mRNA_415 0.38 +1.4
970,196 - 8783 mRNA_415 0.42 -0.8
970,209 - 8783 mRNA_415 0.43 +1.1
970,212 - 8783 mRNA_415 0.43 +1.3
970,222 - 8783 mRNA_415 0.43 +1.0
970,932 + 8783 mRNA_415 0.69 +0.3
970,933 - 8783 mRNA_415 0.69 +0.8
971,085 - 8783 mRNA_415 0.75 -1.4
971,231 + 8783 mRNA_415 0.80 +0.3
971,406 + 8783 mRNA_415 0.86 +0.9
971,520 - +1.6
971,676 - -1.3
971,794 + +1.8
971,807 - +0.1
971,959 - -0.2
971,972 - +0.1
971,990 - +1.3
972,009 + -0.0
972,230 + 8784 mRNA_416 0.13 -0.1
972,248 - 8784 mRNA_416 0.14 +2.1
972,292 + 8784 mRNA_416 0.17 +1.6
972,396 - 8784 mRNA_416 0.25 +0.0
972,397 + 8784 mRNA_416 0.25 +2.3

Or see this region's nucleotide sequence