Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_467

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8834 and 8835 are separated by 326 nucleotides8835 and 8836 are separated by 81 nucleotides mRNA_466: 8834 - Hypothetical Protein, at 1,083,366 to 1,084,523 8834 mRNA_467: 8835 - K07748 E1.1.1.170, NSDHL, ERG26 sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating), at 1,084,850 to 1,086,342 8835 mRNA_468: 8836 - Hypothetical Protein, at 1,086,424 to 1,087,519 8836

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,083,967 + 8834 mRNA_466 0.52 +0.6
1,084,126 + 8834 mRNA_466 0.66 -0.3
1,084,129 + 8834 mRNA_466 0.66 -1.9
1,084,367 + 8834 mRNA_466 0.86 -0.3
1,084,428 + -0.1
1,084,518 - -0.8
1,084,561 + +1.0
1,084,573 + -0.4
1,084,696 - +1.1
1,084,699 - -0.1
1,084,711 - +3.4
1,084,716 - -0.7
1,084,718 + -0.5
1,084,721 + -0.2
1,084,728 - +1.5
1,084,729 + -0.0
1,084,729 + +0.6
1,086,494 - -3.7
1,086,650 + 8836 mRNA_468 0.21 -0.2
1,086,657 - 8836 mRNA_468 0.21 -0.5
1,086,807 + 8836 mRNA_468 0.35 +1.5
1,086,901 - 8836 mRNA_468 0.44 -0.6
1,087,041 - 8836 mRNA_468 0.56 -0.1
1,087,088 - 8836 mRNA_468 0.61 +1.5
1,087,216 + 8836 mRNA_468 0.72 -0.0

Or see this region's nucleotide sequence