Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_477

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8845 and 8846 are separated by 575 nucleotides mRNA_477: 8845 - K10256 FAD2 omega-6 fatty acid desaturase / acyl-lipid omega-6 desaturase (Delta-12 desaturase), at 1,108,768 to 1,110,470 8845 mRNA_478: 8846 - HMMPfam-Tetratricopeptide repeat-PF07719,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 1,111,046 to 1,113,487 8846

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,108,152 - +0.3
1,108,617 - +1.4
1,108,631 + +1.1
1,108,753 + +2.4
1,110,524 + -0.1
1,110,541 + -0.3
1,110,557 + -0.0
1,110,665 + +0.0
1,110,675 + -0.1
1,110,685 + +0.6
1,110,689 - +1.1
1,110,693 + +1.2
1,110,695 - +0.8
1,110,695 - +0.6
1,110,696 + +0.0
1,110,700 + +1.5
1,110,701 + -0.4
1,110,702 - +0.5
1,110,707 - +0.7
1,110,707 - +1.8
1,110,709 - +1.6
1,110,711 - +0.4
1,110,714 - +0.4
1,110,728 + -0.7
1,110,734 + +0.7
1,110,739 + -0.3
1,110,739 + -0.1
1,110,739 + -0.1
1,110,739 + +0.4
1,110,740 - +0.3
1,110,740 - +1.0
1,110,814 - +0.4
1,110,815 - +1.4
1,110,818 - -0.9
1,110,827 - +0.9
1,110,833 + -0.4
1,110,837 - +0.5
1,110,839 - +1.7
1,110,839 - +0.2
1,110,863 + +1.1
1,110,985 + +0.7
1,110,992 - +0.1
1,111,007 - +0.6
1,111,012 + -0.0
1,111,042 + +2.2
1,111,102 - -0.4
1,111,116 - +2.3

Or see this region's nucleotide sequence