Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_507

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8874 and 8875 are separated by 794 nucleotides8875 and 8876 are separated by 347 nucleotides mRNA_506: 8874 - K08793 STK32, YANK serine/threonine kinase 32, at 1,203,196 to 1,205,360 8874 mRNA_507: 8875 - K19347 SUN1_2 SUN domain-containing protein 1/2, at 1,206,155 to 1,210,007 8875 mRNA_508: 8876 - K16466 CETN3, CDC31 centrin-3, at 1,210,355 to 1,211,163 8876

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,205,497 - +2.3
1,205,797 - -0.1
1,207,301 + 8875 mRNA_507 0.30 +1.4
1,207,910 - 8875 mRNA_507 0.46 -0.4
1,209,409 + 8875 mRNA_507 0.84 -1.3
1,209,898 + -0.3

Or see this region's nucleotide sequence