Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_521

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8888 and 8889 are separated by 162 nucleotides8889 and 8890 are separated by 136 nucleotides mRNA_520: 8888 - Hypothetical Protein, at 1,235,308 to 1,236,592 8888 mRNA_521: 8889 - K15102 SLC25A3, PHC, PIC solute carrier family 25 (mitochondrial phosphate transporter), member 3, at 1,236,755 to 1,238,717 8889 mRNA_522: 8890 - K13026 DHX57 ATP-dependent RNA helicase DHX57, at 1,238,854 to 1,244,185 8890

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,236,604 + +0.5
1,238,748 + -0.0
1,238,756 - +0.4
1,238,759 - +1.0
1,238,774 + -0.8
1,238,777 - +2.1
1,238,839 + +0.4
1,238,851 + +0.6
1,238,851 + -0.8
1,238,860 - +0.8
1,238,861 - +0.4
1,239,003 + +1.0
1,239,017 - +0.3
1,239,207 - +0.8
1,239,318 + -1.8
1,239,414 - 8890 mRNA_522 0.11 +0.8
1,239,711 + 8890 mRNA_522 0.16 +0.6

Or see this region's nucleotide sequence