Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_559

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8926 and 8927 are separated by 645 nucleotides mRNA_558: 8926 - HMMPfam-SH3 domain-PF00018,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 1,329,845 to 1,332,752 8926 mRNA_559: 8927 - KOG4672 Uncharacterized conserved low complexity protein, at 1,333,398 to 1,335,053 8927

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,332,929 + -0.4
1,332,943 - +1.0
1,333,041 - +0.7
1,333,082 - -1.0
1,333,087 + -0.4
1,333,088 - +0.5
1,333,092 - -0.0
1,333,102 + +0.5
1,333,107 + +1.2
1,333,369 + -0.1
1,333,371 - +0.1
1,333,522 - -1.8
1,333,526 + -0.5
1,333,641 - 8927 mRNA_559 0.15 +0.0
1,334,108 - 8927 mRNA_559 0.43 +0.3
1,335,027 - +1.1
1,335,143 + +2.8
1,335,175 + +1.4
1,335,313 + -1.0
1,335,449 + -0.6
1,335,496 + -0.2
1,335,576 - +2.2
1,335,800 - -0.2
1,336,043 - -0.2

Or see this region's nucleotide sequence