Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_577

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8944 and 8945 are separated by 176 nucleotides8945 and 8946 are separated by 328 nucleotides mRNA_576: 8944 - K20182 VPS33 vacuolar protein sorting-associated protein 33, at 1,379,753 to 1,382,507 8944 mRNA_577: 8945 - Hypothetical Protein, at 1,382,684 to 1,384,433 8945 mRNA_578: 8946 - K05687 PARK7 protein DJ-1, at 1,384,762 to 1,386,533 8946

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,382,650 + +1.5
1,382,736 + -0.3
1,383,710 - 8945 mRNA_577 0.59 +0.1
1,384,159 + 8945 mRNA_577 0.84 +0.6
1,384,301 + +2.5
1,384,417 - +0.1
1,384,429 - -0.4
1,384,440 - +0.5
1,384,441 - +1.1
1,384,445 + +0.4
1,384,566 + -0.5
1,384,585 + +0.2
1,384,775 + +0.7
1,385,151 + 8946 mRNA_578 0.22 +2.2
1,385,187 - 8946 mRNA_578 0.24 -0.4

Or see this region's nucleotide sequence