Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_597

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8965 and 8966 are separated by 910 nucleotides mRNA_597: 8965 - ProSiteProfiles-APSES-type HTH DNA-binding domain profile.-PS51299,SUPERFAMILY--SSF54616, at 1,435,317 to 1,436,977 8965 mRNA_598: 8966 - ProSiteProfiles-F-box domain profile.-PS50181, at 1,437,888 to 1,441,324 8966

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,434,639 + +1.1
1,434,768 - -0.1
1,434,961 + -0.0
1,435,058 + +1.8
1,435,231 + +0.8
1,435,246 - -0.5
1,435,370 - +0.1
1,435,514 - 8965 mRNA_597 0.12 -0.4
1,435,663 - 8965 mRNA_597 0.21 +1.5
1,435,957 - 8965 mRNA_597 0.39 +1.0
1,436,213 - 8965 mRNA_597 0.54 +1.0
1,436,632 - 8965 mRNA_597 0.79 +1.1
1,436,952 - +1.2
1,436,954 + -2.2
1,437,210 - -0.2
1,437,218 + +1.5
1,437,219 - -0.5
1,437,222 + -0.4
1,437,223 + -0.1
1,437,242 + +0.6
1,437,243 - +1.3
1,437,255 - -0.9
1,437,281 - +0.8
1,437,295 - +0.8
1,437,301 + +0.5
1,437,321 - -0.3
1,437,329 - -0.2
1,437,334 + +0.8
1,437,349 + -0.2
1,437,360 - +0.7
1,437,383 + -0.1
1,437,399 - -0.2
1,437,401 - -0.4
1,437,402 - -1.1
1,437,456 - +0.6
1,437,505 + +0.9
1,437,534 - -0.5
1,437,558 + +0.8
1,437,558 + -0.7
1,437,716 - +0.3
1,437,827 + -0.1
1,437,862 + +0.1

Or see this region's nucleotide sequence