Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_794

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9161 and 9162 are separated by 155 nucleotides9162 and 9163 are separated by 104 nucleotides mRNA_793: 9161 - KOG0374 Serine/threonine specific protein phosphatase PP1, catalytic subunit, at 1,885,981 to 1,887,715 9161 mRNA_794: 9162 - K14834 NOC3 nucleolar complex protein 3, at 1,887,871 to 1,891,135 9162 mRNA_795: 9163 - KOG0137 Very-long-chain acyl-CoA dehydrogenase, at 1,891,240 to 1,893,546 9163

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,886,890 - 9161 mRNA_793 0.52 -0.3
1,886,893 + 9161 mRNA_793 0.53 +0.2
1,887,049 - 9161 mRNA_793 0.62 -0.2
1,887,058 - 9161 mRNA_793 0.62 -0.2
1,887,063 + 9161 mRNA_793 0.62 +1.8
1,887,064 - 9161 mRNA_793 0.62 +1.3
1,887,193 - 9161 mRNA_793 0.70 -0.0
1,887,464 - 9161 mRNA_793 0.85 +0.4
1,887,631 + +0.1
1,887,787 + +1.0
1,891,141 - -1.3
1,891,173 - +0.5
1,891,500 + 9163 mRNA_795 0.11 +0.1
1,891,852 - 9163 mRNA_795 0.27 +1.0

Or see this region's nucleotide sequence