Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_824

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9191 and 9192 are separated by 373 nucleotides9192 and 9193 are separated by 469 nucleotides mRNA_823: 9191 - HMMPfam-Fungal domain of unknown function (DUF1712)-PF08217, at 1,971,584 to 1,974,293 9191 mRNA_824: 9192 - Hypothetical Protein, at 1,974,667 to 1,975,574 9192 mRNA_825: 9193 - HMMPfam-Modifier of rudimentary (Mod(r)) protein-PF07200,ProSiteProfiles-VPS37 C-terminal domain profile.-PS51314,SUPERFAMILY--SSF140111, at 1,976,044 to 1,976,786 9193

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,973,719 - 9191 mRNA_823 0.79 +0.9
1,974,203 - -0.2
1,974,294 - -0.1
1,974,457 + +0.1
1,975,027 - 9192 mRNA_824 0.40 +0.4
1,975,054 + 9192 mRNA_824 0.43 +0.8
1,975,607 - +0.7
1,975,657 + -0.4
1,975,757 + +0.8
1,975,897 - +1.3
1,976,030 - -0.8
1,976,340 - 9193 mRNA_825 0.40 -0.5

Or see this region's nucleotide sequence