Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_866

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9233 and 9234 are separated by 265 nucleotides9234 and 9235 are separated by 510 nucleotides mRNA_865: 9233 - Hypothetical Protein, at 2,069,621 to 2,070,853 9233 mRNA_866: 9234 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 2,071,119 to 2,072,862 9234 mRNA_867: 9235 - K17808 ZIM17, DNLZ, Tim15 mitochondrial protein import protein ZIM17, at 2,073,373 to 2,073,740 9235

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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2,070,197 + 9233 mRNA_865 0.47 -0.5
2,070,335 - 9233 mRNA_865 0.58 -1.1
2,070,439 + 9233 mRNA_865 0.66 +2.3
2,070,569 + 9233 mRNA_865 0.77 -2.3
2,070,570 - 9233 mRNA_865 0.77 +1.1
2,070,841 - -0.2
2,070,990 - +0.3
2,070,999 - +1.8
2,071,033 + +2.1
2,071,446 - 9234 mRNA_866 0.19 -0.8
2,071,685 + 9234 mRNA_866 0.32 -1.5
2,072,070 + 9234 mRNA_866 0.55 -1.2
2,072,476 + 9234 mRNA_866 0.78 -2.6
2,072,637 - 9234 mRNA_866 0.87 +0.3
2,072,712 + -0.0
2,072,718 - +1.3
2,072,731 - +0.4
2,072,750 - +0.3
2,072,764 - -0.8
2,072,766 + -0.6
2,072,797 - -1.2
2,072,921 - -1.3
2,073,074 - +1.3
2,073,332 + +0.0

Or see this region's nucleotide sequence