Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_888

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9255 and 9256 are separated by 200 nucleotides9256 and 9257 are separated by 986 nucleotides mRNA_887: 9255 - K04409 PAK1 p21-activated kinase 1, at 2,120,466 to 2,123,959 9255 mRNA_888: 9256 - KOG1773 Stress responsive protein, at 2,124,160 to 2,125,041 9256 mRNA_889: 9257 - HMMPfam-Ribonuclease III domain-PF00636,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF69065, at 2,126,028 to 2,126,699 9257

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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2,123,679 - -0.1
2,123,859 - -0.1
2,123,957 + -1.4
2,124,003 + +2.2
2,124,009 - +1.1
2,124,108 - +0.1
2,124,139 - +0.9
2,124,179 - +1.2
2,124,192 - -0.5
2,124,295 - 9256 mRNA_888 0.15 +0.1
2,124,351 - 9256 mRNA_888 0.22 +0.8
2,124,464 + 9256 mRNA_888 0.34 -0.1
2,124,744 - 9256 mRNA_888 0.66 -0.3
2,124,878 - 9256 mRNA_888 0.81 +0.2
2,125,018 + +1.4
2,125,021 - -1.3
2,125,207 + +1.1
2,125,702 + +1.0
2,125,789 + +0.6

Or see this region's nucleotide sequence