Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_933

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9301 and 9302 are separated by 239 nucleotides mRNA_933: 9301 - HMMPfam-NDT80 / PhoG like DNA-binding family-PF05224,ProSiteProfiles-NDT80 DNA-binding domain profile.-PS51517,SUPERFAMILY--SSF49417, at 9,624 to 11,846 9301 mRNA_934: 9302 - K18726 FAF2, UBXD8 FAS-associated factor 2, at 12,086 to 14,306 9302

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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8,713 + +2.6
8,720 + -0.7
8,730 + +0.4
8,997 - +0.9
9,006 - +0.3
9,324 - -0.9
9,425 - +1.0
9,593 - -0.4
9,726 - +0.4
9,802 - -0.3
9,994 + 9301 mRNA_933 0.17 +0.3
10,128 - 9301 mRNA_933 0.23 +1.2
10,297 - 9301 mRNA_933 0.30 -0.0
10,579 - 9301 mRNA_933 0.43 -0.2
10,640 + 9301 mRNA_933 0.46 +0.5
10,773 - 9301 mRNA_933 0.52 +0.3
10,856 + 9301 mRNA_933 0.55 +0.3
11,492 + 9301 mRNA_933 0.84 +1.6
11,629 + +1.8
11,727 - +1.4
11,740 - -1.8
11,844 - -0.6
11,885 - +1.0
12,062 - -0.8
12,172 + +0.2
12,342 + 9302 mRNA_934 0.12 +1.5

Or see this region's nucleotide sequence