Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_940

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9307 and 9308 are separated by 233 nucleotides9308 and 9309 are separated by 311 nucleotides mRNA_939: 9307 - Hypothetical Protein, at 23,746 to 25,185 9307 mRNA_940: 9308 - Hypothetical Protein, at 25,419 to 26,964 9308 mRNA_941: 9309 - HMMPfam-Calcineurin-like phosphoesterase-PF00149,SUPERFAMILY--SSF56300, at 27,276 to 29,421 9309

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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24,487 + 9307 mRNA_939 0.51 +0.3
24,538 - 9307 mRNA_939 0.55 +0.7
24,633 + 9307 mRNA_939 0.62 +1.3
24,682 - 9307 mRNA_939 0.65 +3.1
24,763 + 9307 mRNA_939 0.71 +1.2
24,807 + 9307 mRNA_939 0.74 +0.9
24,928 + 9307 mRNA_939 0.82 +2.3
24,976 - 9307 mRNA_939 0.85 +1.9
25,080 - -0.8
25,109 - +1.6
25,206 + +0.8
25,346 - -0.9
25,350 + -0.5
25,432 + +2.0
25,445 + +1.6
25,484 - +3.6
25,486 - +0.5
25,492 + +0.5
25,673 - 9308 mRNA_940 0.16 +0.7
25,673 - 9308 mRNA_940 0.16 +0.1
25,709 - 9308 mRNA_940 0.19 +0.6
25,836 + 9308 mRNA_940 0.27 +1.9
25,839 - 9308 mRNA_940 0.27 -1.4
25,876 - 9308 mRNA_940 0.30 +0.5
26,089 - 9308 mRNA_940 0.43 -0.1
26,104 + 9308 mRNA_940 0.44 -0.1
26,116 + 9308 mRNA_940 0.45 +1.2
26,188 - 9308 mRNA_940 0.50 +0.2
26,189 - 9308 mRNA_940 0.50 +1.1
26,195 + 9308 mRNA_940 0.50 +0.4
26,379 + 9308 mRNA_940 0.62 -0.1
26,433 - 9308 mRNA_940 0.66 -3.8
26,439 - 9308 mRNA_940 0.66 +1.4
26,441 - 9308 mRNA_940 0.66 -0.6
26,457 - 9308 mRNA_940 0.67 +0.5
26,516 - 9308 mRNA_940 0.71 +2.1
26,556 + 9308 mRNA_940 0.74 +2.7
26,560 + 9308 mRNA_940 0.74 -0.0
26,561 - 9308 mRNA_940 0.74 +0.9
26,566 + 9308 mRNA_940 0.74 -0.4
26,619 + 9308 mRNA_940 0.78 +3.3
26,629 + 9308 mRNA_940 0.78 +1.2
26,672 - 9308 mRNA_940 0.81 -0.4
26,727 + 9308 mRNA_940 0.85 +2.1
26,727 - 9308 mRNA_940 0.85 +0.8
26,727 - 9308 mRNA_940 0.85 +0.4
26,728 + 9308 mRNA_940 0.85 -0.3
26,820 + +0.3
26,822 + -0.6
26,866 - -0.2
26,869 + +1.3
26,891 + -0.1
26,960 - +0.2
27,001 - +2.0
27,021 + +3.1
27,021 - -0.4
27,025 - +0.0
27,025 - -0.2
27,074 - +0.3
27,119 + +2.1
27,156 - +1.2
27,159 - +1.9
27,197 + +0.3
27,409 - +0.7
27,417 - +0.0
27,443 - +0.4
27,447 - -1.5
27,470 - +0.2
27,507 + 9309 mRNA_941 0.11 -0.9
27,559 + 9309 mRNA_941 0.13 -1.7
27,562 - 9309 mRNA_941 0.13 +0.3

Or see this region's nucleotide sequence