Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_950

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9317 and 9318 are separated by 202 nucleotides9318 and 9319 are separated by 93 nucleotides mRNA_949: 9317 - KOG1268 Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains, at 45,301 to 46,716 9317 mRNA_950: 9318 - Hypothetical Protein, at 46,919 to 47,823 9318 mRNA_951: 9319 - K16261 YAT yeast amino acid transporter, at 47,917 to 50,163 9319

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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45,955 + 9317 mRNA_949 0.46 -0.2
46,069 - 9317 mRNA_949 0.54 -1.7
46,175 - 9317 mRNA_949 0.62 +0.9
46,217 + 9317 mRNA_949 0.65 +0.8
46,799 - -0.4
46,985 - -1.4
47,127 + 9318 mRNA_950 0.23 +0.2
47,135 - 9318 mRNA_950 0.24 +0.7
47,136 - 9318 mRNA_950 0.24 +0.9
47,137 - 9318 mRNA_950 0.24 +0.7
47,142 - 9318 mRNA_950 0.25 +0.3
47,145 + 9318 mRNA_950 0.25 +0.9
47,147 - 9318 mRNA_950 0.25 +2.3
47,150 + 9318 mRNA_950 0.26 +0.8
47,150 + 9318 mRNA_950 0.26 +0.2
47,159 + 9318 mRNA_950 0.27 +1.1
47,160 + 9318 mRNA_950 0.27 -0.5
47,165 + 9318 mRNA_950 0.27 +0.4
47,166 + 9318 mRNA_950 0.27 +1.9
47,166 + 9318 mRNA_950 0.27 +0.0
47,201 - 9318 mRNA_950 0.31 +0.7
47,204 + 9318 mRNA_950 0.31 +0.5
47,206 + 9318 mRNA_950 0.32 +3.0
47,207 + 9318 mRNA_950 0.32 +0.6
47,207 - 9318 mRNA_950 0.32 +0.3
47,210 + 9318 mRNA_950 0.32 +0.4
47,212 - 9318 mRNA_950 0.32 +1.1
47,217 - 9318 mRNA_950 0.33 +0.3
47,223 + 9318 mRNA_950 0.34 -0.3
47,227 - 9318 mRNA_950 0.34 +0.8
47,229 + 9318 mRNA_950 0.34 -0.1
47,230 - 9318 mRNA_950 0.34 -0.6
47,250 + 9318 mRNA_950 0.37 -0.9
47,329 + 9318 mRNA_950 0.45 +0.1
47,340 + 9318 mRNA_950 0.47 +0.7
47,351 + 9318 mRNA_950 0.48 +0.3
47,353 + 9318 mRNA_950 0.48 -0.4
47,354 + 9318 mRNA_950 0.48 +0.2
47,393 + 9318 mRNA_950 0.52 -0.4
47,395 + 9318 mRNA_950 0.53 -0.2
47,404 - 9318 mRNA_950 0.54 +0.2
47,410 + 9318 mRNA_950 0.54 +0.1
47,414 + 9318 mRNA_950 0.55 -1.3
47,420 + 9318 mRNA_950 0.55 +0.7
47,504 - 9318 mRNA_950 0.65 +1.4
47,521 + 9318 mRNA_950 0.67 +2.3
47,525 + 9318 mRNA_950 0.67 +0.7
47,530 - 9318 mRNA_950 0.68 +0.7
47,539 + 9318 mRNA_950 0.69 -0.4
47,549 - 9318 mRNA_950 0.70 +1.6
47,552 + 9318 mRNA_950 0.70 +0.5
47,577 + 9318 mRNA_950 0.73 +0.9
47,577 + 9318 mRNA_950 0.73 +0.2
47,622 + 9318 mRNA_950 0.78 +0.8
47,705 - 9318 mRNA_950 0.87 +0.2
47,729 - 9318 mRNA_950 0.90 +0.4
47,750 + +0.1
47,755 - +1.3
47,846 - +1.2
47,998 - +1.2
48,155 - 9319 mRNA_951 0.11 +0.2
48,443 - 9319 mRNA_951 0.23 +0.4
48,457 - 9319 mRNA_951 0.24 -0.2
48,495 - 9319 mRNA_951 0.26 -1.2
48,518 + 9319 mRNA_951 0.27 -0.1
48,587 - 9319 mRNA_951 0.30 +1.3

Or see this region's nucleotide sequence