Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_951

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9318 and 9319 are separated by 93 nucleotides9319 and 9320 are separated by 264 nucleotides mRNA_950: 9318 - Hypothetical Protein, at 46,919 to 47,823 9318 mRNA_951: 9319 - K16261 YAT yeast amino acid transporter, at 47,917 to 50,163 9319 mRNA_952: 9320 - Hypothetical Protein, at 50,428 to 51,116 9320

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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46,985 - -1.4
47,127 + 9318 mRNA_950 0.23 +0.2
47,135 - 9318 mRNA_950 0.24 +0.7
47,136 - 9318 mRNA_950 0.24 +0.9
47,137 - 9318 mRNA_950 0.24 +0.7
47,142 - 9318 mRNA_950 0.25 +0.3
47,145 + 9318 mRNA_950 0.25 +0.9
47,147 - 9318 mRNA_950 0.25 +2.3
47,150 + 9318 mRNA_950 0.26 +0.8
47,150 + 9318 mRNA_950 0.26 +0.2
47,159 + 9318 mRNA_950 0.27 +1.1
47,160 + 9318 mRNA_950 0.27 -0.5
47,165 + 9318 mRNA_950 0.27 +0.4
47,166 + 9318 mRNA_950 0.27 +1.9
47,166 + 9318 mRNA_950 0.27 +0.0
47,201 - 9318 mRNA_950 0.31 +0.7
47,204 + 9318 mRNA_950 0.31 +0.5
47,206 + 9318 mRNA_950 0.32 +3.0
47,207 + 9318 mRNA_950 0.32 +0.6
47,207 - 9318 mRNA_950 0.32 +0.3
47,210 + 9318 mRNA_950 0.32 +0.4
47,212 - 9318 mRNA_950 0.32 +1.1
47,217 - 9318 mRNA_950 0.33 +0.3
47,223 + 9318 mRNA_950 0.34 -0.3
47,227 - 9318 mRNA_950 0.34 +0.8
47,229 + 9318 mRNA_950 0.34 -0.1
47,230 - 9318 mRNA_950 0.34 -0.6
47,250 + 9318 mRNA_950 0.37 -0.9
47,329 + 9318 mRNA_950 0.45 +0.1
47,340 + 9318 mRNA_950 0.47 +0.7
47,351 + 9318 mRNA_950 0.48 +0.3
47,353 + 9318 mRNA_950 0.48 -0.4
47,354 + 9318 mRNA_950 0.48 +0.2
47,393 + 9318 mRNA_950 0.52 -0.4
47,395 + 9318 mRNA_950 0.53 -0.2
47,404 - 9318 mRNA_950 0.54 +0.2
47,410 + 9318 mRNA_950 0.54 +0.1
47,414 + 9318 mRNA_950 0.55 -1.3
47,420 + 9318 mRNA_950 0.55 +0.7
47,504 - 9318 mRNA_950 0.65 +1.4
47,521 + 9318 mRNA_950 0.67 +2.3
47,525 + 9318 mRNA_950 0.67 +0.7
47,530 - 9318 mRNA_950 0.68 +0.7
47,539 + 9318 mRNA_950 0.69 -0.4
47,549 - 9318 mRNA_950 0.70 +1.6
47,552 + 9318 mRNA_950 0.70 +0.5
47,577 + 9318 mRNA_950 0.73 +0.9
47,577 + 9318 mRNA_950 0.73 +0.2
47,622 + 9318 mRNA_950 0.78 +0.8
47,705 - 9318 mRNA_950 0.87 +0.2
47,729 - 9318 mRNA_950 0.90 +0.4
47,750 + +0.1
47,755 - +1.3
47,846 - +1.2
47,998 - +1.2
48,155 - 9319 mRNA_951 0.11 +0.2
48,443 - 9319 mRNA_951 0.23 +0.4
48,457 - 9319 mRNA_951 0.24 -0.2
48,495 - 9319 mRNA_951 0.26 -1.2
48,518 + 9319 mRNA_951 0.27 -0.1
48,587 - 9319 mRNA_951 0.30 +1.3
49,335 + 9319 mRNA_951 0.63 +0.1
49,418 - 9319 mRNA_951 0.67 +0.8
49,730 + 9319 mRNA_951 0.81 +0.9
50,228 + -1.4
50,326 + +0.2
50,387 + +0.5
50,449 - -1.5
50,739 - 9320 mRNA_952 0.45 +0.2
50,784 + 9320 mRNA_952 0.52 +1.5
50,932 - 9320 mRNA_952 0.73 +0.9
51,072 + +1.0

Or see this region's nucleotide sequence