Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_966

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9333 and 9334 are separated by 582 nucleotides mRNA_965: 9333 - Hypothetical Protein, at 90,078 to 91,448 9333 mRNA_966: 9334 - BLAST probable GUS1-Glutamyl-tRNA synthetase [Ustilago hordei], at 92,031 to 92,569 9334

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
91,225 - 9333 mRNA_965 0.84 -0.6
91,326 + -0.2
91,357 + +0.0
91,371 + +1.1
91,468 + +0.1
91,468 + +0.5
91,469 - +0.8
91,614 - -0.2
91,615 - +0.1
91,617 + +0.5
91,642 + -0.7
91,650 - -1.1
91,805 - -0.8
91,816 + -0.1
91,951 + -1.4
91,953 + -0.5
91,970 - +2.9
91,974 - +1.5
91,988 + -0.7
92,075 - -0.7
92,116 + 9334 mRNA_966 0.16 -1.6
92,210 + 9334 mRNA_966 0.33 +0.2
92,386 + 9334 mRNA_966 0.66 +0.3
92,412 + 9334 mRNA_966 0.71 +3.1
92,413 + 9334 mRNA_966 0.71 +0.6
92,570 + +1.0
92,667 + +0.6
92,680 + -0.8
92,688 + -0.5
92,821 - +0.4
93,158 + +0.4
93,234 - +1.1
93,279 - +1.3
93,293 + +0.6
93,298 + -0.4
93,399 + +0.1
93,450 - +0.0
93,563 + +0.5

Or see this region's nucleotide sequence