Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_969

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9337 and 9338 are separated by 177 nucleotides mRNA_969: 9337 - Hypothetical Protein, at 99,924 to 100,860 9337 mRNA_970: 9338 - Hypothetical Protein, at 101,038 to 101,526 9338

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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98,971 + +1.8
98,975 + +1.1
98,986 - +1.2
99,008 + +0.0
99,141 - -0.0
99,395 - -0.3
99,400 + -0.8
99,401 + +2.9
99,402 - +0.6
99,402 + +1.5
99,402 - +0.3
99,403 - -0.3
99,407 + +1.2
99,407 + +0.1
99,409 - -1.9
99,410 - -0.8
99,412 - -0.6
99,413 - +0.1
99,415 + +0.0
99,422 - -0.7
99,425 + -0.6
99,574 + +0.1
99,587 - -1.0
99,743 + -0.7
99,756 - +1.1
99,852 - +0.7
99,870 - +0.5
99,875 - +1.0
99,886 - -0.1
100,001 - +1.6
100,148 + 9337 mRNA_969 0.24 +0.3
100,163 + 9337 mRNA_969 0.26 -1.4
100,421 + 9337 mRNA_969 0.53 +0.3
101,027 - -1.1
101,032 + -1.7
101,033 + -0.1
101,579 + +0.2

Or see this region's nucleotide sequence