Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_980

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9347 and 9348 are separated by 541 nucleotides9348 and 9349 are separated by 295 nucleotides mRNA_979: 9347 - K03123 TFIIA2, GTF2A2, TOA2 transcription initiation factor TFIIA small subunit, at 124,895 to 125,472 9347 mRNA_980: 9348 - K03946 NDUFA2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 2, at 126,014 to 126,825 9348 mRNA_981: 9349 - K11097 SNRPE, SME small nuclear ribonucleoprotein E, at 127,121 to 128,038 9349

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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125,601 + +0.2
125,617 - -0.1
125,643 + -0.0
125,738 - +0.5
125,774 - +0.2
125,853 - -0.1
125,902 - +0.8
125,906 + +3.3
126,927 - +0.1
126,935 + +0.3
126,936 - +0.6
126,947 + +0.1
126,959 + +0.1
126,978 - -0.5
127,071 - +1.5
127,573 + 9349 mRNA_981 0.49 +0.6

Or see this region's nucleotide sequence