Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_985

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9352 and 9353 are separated by 177 nucleotides9353 and 9354 are separated by 749 nucleotides mRNA_984: 9352 - Hypothetical Protein, at 132,612 to 133,421 9352 mRNA_985: 9353 - K14399 CLP1, HERB polyribonucleotide 5'-hydroxyl-kinase, at 133,599 to 135,746 9353 mRNA_986: 9354 - K03781 katE, CAT, catB, srpA catalase, at 136,496 to 139,711 9354

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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132,667 - +1.3
132,811 - 9352 mRNA_984 0.25 -0.7
132,815 - 9352 mRNA_984 0.25 +0.2
132,818 + 9352 mRNA_984 0.25 +0.3
132,819 - 9352 mRNA_984 0.26 +2.0
132,916 + 9352 mRNA_984 0.38 -0.3
132,945 - 9352 mRNA_984 0.41 -0.8
132,956 + 9352 mRNA_984 0.42 +0.3
133,127 - 9352 mRNA_984 0.64 +1.1
133,139 + 9352 mRNA_984 0.65 +1.1
133,142 + 9352 mRNA_984 0.65 +0.4
133,273 + 9352 mRNA_984 0.82 +1.0
133,284 - 9352 mRNA_984 0.83 +0.5
133,295 + 9352 mRNA_984 0.84 +0.4
133,309 - 9352 mRNA_984 0.86 +0.1
133,429 - -0.1
133,430 - -0.4
133,433 - -0.6
133,439 + -0.2
133,444 + +2.1
133,460 - -0.7
133,462 - -0.6
133,465 + -0.6
133,465 - +1.4
133,467 + -1.4
133,470 - -0.2
133,470 + -0.5
133,471 + -0.2
133,478 + +1.4
133,481 + -0.3
133,485 + +0.3
133,489 + +0.2
133,493 + -0.5
133,505 - -1.3
133,518 + +0.7
133,602 - +0.7
133,611 - +0.2
135,868 + +1.5
136,018 + -0.7
136,019 - +1.7
136,038 + -0.8
136,084 - +0.4
136,094 - +1.5
136,095 + +0.5
136,099 + +0.2
136,099 - +0.8
136,100 - -2.1
136,103 + -0.3
136,103 + +1.5
136,115 - +1.5
136,119 - +0.2
136,122 - +2.2
136,123 - -0.9
136,146 + +2.4
136,148 - +2.1
136,153 + +0.9
136,161 - +0.6
136,161 - -0.3
136,172 - -2.2
136,176 + -0.2
136,190 - +0.1
136,222 - -0.3
136,303 + +0.0
136,303 + +0.6
136,311 - -0.0
136,315 + -1.2
136,343 + -0.2

Or see this region's nucleotide sequence