Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1032

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9399 and 9400 are separated by 766 nucleotides9400 and 9401 are separated by 103 nucleotides mRNA_1031: 9399 - Hypothetical Protein, at 243,665 to 244,261 9399 mRNA_1032: 9400 - Hypothetical Protein, at 245,028 to 245,336 9400 mRNA_1033: 9401 - KOG4653 Uncharacterized conserved protein, at 245,440 to 249,406 9401

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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244,184 + 9399 mRNA_1031 0.87 +3.7
244,251 + -0.7
244,270 + +0.1
244,296 + -0.6
244,379 - +0.9
244,470 + +0.5
244,515 + -0.0
244,528 - +1.5
244,541 - +0.1
244,543 - +1.3
244,847 + +0.4
244,987 + -0.0
244,992 + -0.2
244,994 + +0.3
244,995 - +0.1
245,246 - 9400 mRNA_1032 0.71 +1.2
245,264 - 9400 mRNA_1032 0.76 +1.2
245,287 - 9400 mRNA_1032 0.84 +1.2
245,312 + +0.1
245,385 + -0.0
245,403 - +0.1
245,432 + +0.3
245,433 - +0.4
245,433 - +0.4
245,440 + +0.2

Or see this region's nucleotide sequence