Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1051

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9417 and 9418 are separated by 278 nucleotides9418 and 9419 are separated by 84 nucleotides9419 and 9420 are separated by 364 nucleotides mRNA_1049: 9417 - K12878 THOC1 THO complex subunit 1, at 274,076 to 276,723 9417 mRNA_1050: 9418 - Hypothetical Protein, at 277,002 to 277,499 9418 mRNA_1051: 9419 - SUPERFAMILY--SSF54928, at 277,584 to 281,665 9419 mRNA_1052: 9420 - K10896 FANCM fanconi anemia group M protein, at 282,030 to 286,830 9420

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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276,722 - -0.4
276,759 + +0.2
276,785 + +0.1
276,920 + +1.0
276,920 - +1.8
276,925 + -1.1
276,928 + -0.0
276,930 + +1.7
276,931 - +2.1
276,949 + +1.8
276,960 - +0.1
277,069 - 9418 mRNA_1050 0.13 -0.0
277,209 + 9418 mRNA_1050 0.42 -0.3
277,243 + 9418 mRNA_1050 0.48 +1.7
277,349 - 9418 mRNA_1050 0.70 -0.4
277,353 + 9418 mRNA_1050 0.70 +1.6
277,381 + 9418 mRNA_1050 0.76 -0.2
278,259 + 9419 mRNA_1051 0.17 +0.5
278,286 + 9419 mRNA_1051 0.17 +0.3
278,711 + 9419 mRNA_1051 0.28 +1.2
278,818 - 9419 mRNA_1051 0.30 +1.1
279,031 + 9419 mRNA_1051 0.35 +1.9
279,068 - 9419 mRNA_1051 0.36 -0.9
279,117 - 9419 mRNA_1051 0.38 +1.8
279,157 + 9419 mRNA_1051 0.39 +0.1
279,173 + 9419 mRNA_1051 0.39 +1.9
279,364 - 9419 mRNA_1051 0.44 +0.2
279,454 - 9419 mRNA_1051 0.46 +0.1
279,460 - 9419 mRNA_1051 0.46 -0.0
279,541 - 9419 mRNA_1051 0.48 +0.6
279,582 - 9419 mRNA_1051 0.49 -0.2
279,694 - 9419 mRNA_1051 0.52 +0.5
279,843 + 9419 mRNA_1051 0.55 +0.0
280,171 + 9419 mRNA_1051 0.63 +0.8
280,295 + 9419 mRNA_1051 0.66 +0.6
280,325 + 9419 mRNA_1051 0.67 -0.3
280,907 + 9419 mRNA_1051 0.81 +0.6
280,909 - 9419 mRNA_1051 0.81 -1.0
280,930 + 9419 mRNA_1051 0.82 +1.7
281,194 - 9419 mRNA_1051 0.88 +0.0
281,482 - -0.2
281,640 + -0.8
281,799 - -0.0
281,809 - +0.4
281,815 - -0.7
281,817 + +1.5
281,819 - -3.7
281,841 - +0.7
281,932 - +0.5
281,951 - +0.1
281,966 - -0.6
281,986 + +1.7
282,006 + +0.4
282,080 + +0.7
282,129 - +0.0
282,161 + -0.3
282,407 + -0.2
282,438 + -0.9
282,494 + +1.4
282,502 + +0.2
282,574 - 9420 mRNA_1052 0.11 -1.2

Or see this region's nucleotide sequence