Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1165

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9532 and 9533 are separated by 430 nucleotides9533 and 9534 are separated by 415 nucleotides mRNA_1164: 9532 - Hypothetical Protein, at 552,710 to 552,960 9532 mRNA_1165: 9533 - HMMPfam-Protein of unknown function (DUF1445)-PF07286,PIRSF--PIRSF029755,SUPERFAMILY--SSF160920, at 553,391 to 554,372 9533 mRNA_1166: 9534 - KOG2533 Permease of the major facilitator superfamily, at 554,788 to 557,060 9534

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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552,650 + -1.4
552,697 - -0.6
552,701 + +0.0
552,761 + 9532 mRNA_1164 0.20 +1.3
552,777 - 9532 mRNA_1164 0.27 +1.5
552,788 - 9532 mRNA_1164 0.31 +2.6
552,789 - 9532 mRNA_1164 0.31 +1.3
552,824 + 9532 mRNA_1164 0.45 -0.1
552,848 - 9532 mRNA_1164 0.55 +0.3
552,853 + 9532 mRNA_1164 0.57 +0.2
553,116 - +0.3
553,137 - +0.1
553,157 + -1.2
553,161 + +1.5
553,270 + +0.2
553,272 - +1.4
553,435 - +1.1
553,528 - 9533 mRNA_1165 0.14 +2.1
553,595 - 9533 mRNA_1165 0.21 +0.3
553,726 + 9533 mRNA_1165 0.34 +0.2
553,732 - 9533 mRNA_1165 0.35 +0.0
554,014 - 9533 mRNA_1165 0.63 -0.3
554,023 - 9533 mRNA_1165 0.64 +1.1
554,278 - +1.1
554,286 + +0.1
554,351 + +1.2
554,544 + +0.2
554,563 - +0.5
554,625 - -1.4
554,710 - +0.0
555,124 + 9534 mRNA_1166 0.15 -0.0
555,178 + 9534 mRNA_1166 0.17 +0.9
555,341 + 9534 mRNA_1166 0.24 +0.3
555,344 - 9534 mRNA_1166 0.24 +0.1

Or see this region's nucleotide sequence