Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1182

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9549 and 9550 are separated by 412 nucleotides9550 and 9551 are separated by 267 nucleotides mRNA_1181: 9549 - Hypothetical Protein, at 592,662 to 593,327 9549 mRNA_1182: 9550 - K12816 CDC40, PRP17 pre-mRNA-processing factor 17, at 593,740 to 596,442 9550 mRNA_1183: 9551 - KOG2533 Permease of the major facilitator superfamily, at 596,710 to 598,781 9551

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
592,835 - 9549 mRNA_1181 0.26 +0.5
593,119 - 9549 mRNA_1181 0.69 -1.1
593,361 + -0.2
593,438 + -0.5
593,517 - +0.6
593,520 - +2.3
593,526 - -0.8
593,528 + +0.1
593,544 - -0.1
593,550 + -2.4
593,696 - +1.6
593,717 + -0.9
594,000 + +0.5
596,527 - +1.9
596,543 - -1.4
596,559 + -0.3
596,559 + +0.9
596,578 - -0.2
596,579 - +0.3
596,596 + +0.6
596,885 - -0.4
596,903 + -0.4
596,904 + +0.3
597,192 - 9551 mRNA_1183 0.23 -0.9
597,228 - 9551 mRNA_1183 0.25 -1.1
597,318 - 9551 mRNA_1183 0.29 +0.6
597,387 - 9551 mRNA_1183 0.33 +0.3
597,411 + 9551 mRNA_1183 0.34 +0.1
597,431 - 9551 mRNA_1183 0.35 -0.2

Or see this region's nucleotide sequence