Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1186

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9553 and 9554 are separated by 96 nucleotides9554 and 9555 are separated by 290 nucleotides mRNA_1185: 9553 - KOG1399 Flavin-containing monooxygenase, at 601,404 to 603,765 9553 mRNA_1186: 9554 - K20410 MAPKAP1, SIN1 target of rapamycin complex 2 subunit MAPKAP1, at 603,862 to 607,168 9554 mRNA_1187: 9555 - Hypothetical Protein, at 607,459 to 608,635 9555

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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602,908 + 9553 mRNA_1185 0.64 -2.1
602,911 - 9553 mRNA_1185 0.64 -0.9
602,920 - 9553 mRNA_1185 0.64 +0.5
602,979 - 9553 mRNA_1185 0.67 +0.6
602,989 + 9553 mRNA_1185 0.67 +0.4
603,066 + 9553 mRNA_1185 0.70 -0.1
603,262 - 9553 mRNA_1185 0.79 +1.0
603,282 - 9553 mRNA_1185 0.80 -0.3
603,283 - 9553 mRNA_1185 0.80 +0.6
603,283 - 9553 mRNA_1185 0.80 +0.5
603,304 + 9553 mRNA_1185 0.80 +0.6
603,414 - 9553 mRNA_1185 0.85 -0.2
603,426 - 9553 mRNA_1185 0.86 +1.3
603,526 - 9553 mRNA_1185 0.90 -0.2
603,565 - +0.3
603,697 - +0.4
603,752 + +0.2
604,074 + +0.7
604,101 - +0.9
604,351 + 9554 mRNA_1186 0.15 -0.4
604,465 - 9554 mRNA_1186 0.18 -0.3
605,013 + 9554 mRNA_1186 0.35 +0.0
606,354 + 9554 mRNA_1186 0.75 +0.7
606,486 + 9554 mRNA_1186 0.79 +0.6
606,496 - 9554 mRNA_1186 0.80 +0.8
606,550 + 9554 mRNA_1186 0.81 +0.6
607,222 - -0.2
607,251 - +0.4
607,398 + -0.1

Or see this region's nucleotide sequence