Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1195

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9562 and 9563 are separated by 469 nucleotides9563 and 9564 are separated by 792 nucleotides mRNA_1194: 9562 - K05925 METTL3_14 mRNA (2'-O-methyladenosine-N6-)-methyltransferase, at 621,153 to 623,607 9562 mRNA_1195: 9563 - K03248 EIF3G translation initiation factor 3 subunit G, at 624,077 to 625,434 9563 mRNA_1196: 9564 - HMMPfam-Membrane bound O-acyl transferase family-PF13813, at 626,227 to 627,477 9564

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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623,205 - 9562 mRNA_1194 0.84 +0.8
623,211 - 9562 mRNA_1194 0.84 +2.0
623,643 - +0.5
623,644 - +2.2
623,647 - +0.5
623,672 + -0.2
623,791 + -1.5
623,851 + -2.2
623,854 + -0.4
624,089 - -0.4
625,859 + +1.2
625,874 - +1.5
625,994 + -0.3
626,006 - -1.7
626,007 - -1.1
626,008 + +1.3
626,015 + +0.0
626,042 + +1.6
626,135 - +1.0
626,246 + +0.5
626,299 - -0.1
626,427 + 9564 mRNA_1196 0.16 +0.1

Or see this region's nucleotide sequence