Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1198

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9565 and 9566 are separated by 228 nucleotides9566 and 9567 are separated by 409 nucleotides mRNA_1197: 9565 - KOG2385 Uncharacterized conserved protein, at 628,765 to 631,426 9565 mRNA_1198: 9566 - Hypothetical Protein, at 631,655 to 633,710 9566 mRNA_1199: 9567 - K02325 POLE2 DNA polymerase epsilon subunit 2, at 634,120 to 636,519 9567

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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631,105 - 9565 mRNA_1197 0.88 -0.2
631,247 - +0.3
631,259 + +0.4
631,508 - -1.1
631,666 - +0.8
632,018 + 9566 mRNA_1198 0.18 -0.5
632,544 - 9566 mRNA_1198 0.43 -1.0
632,569 + 9566 mRNA_1198 0.44 +0.3
632,879 + 9566 mRNA_1198 0.60 +0.2
632,881 + 9566 mRNA_1198 0.60 +0.4
632,979 - 9566 mRNA_1198 0.64 +2.7
633,131 + 9566 mRNA_1198 0.72 +0.5
633,295 - 9566 mRNA_1198 0.80 +0.1
633,296 + 9566 mRNA_1198 0.80 +1.8
633,316 - 9566 mRNA_1198 0.81 +0.6
633,715 - +0.4
633,716 + +0.3
633,716 + -0.2
633,753 - -0.2
634,029 + +0.6
634,044 - +0.5
634,048 - +1.0
634,049 + +2.3
634,071 + +0.8

Or see this region's nucleotide sequence