Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1435

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9802 and 9803 are separated by 209 nucleotides9803 and 9804 are separated by 352 nucleotides mRNA_1434: 9802 - Hypothetical Protein, at 270,891 to 274,299 9802 mRNA_1435: 9803 - Hypothetical Protein, at 274,509 to 275,627 9803 mRNA_1436: 9804 - BLAST Stil protein [Mus musculus], at 275,980 to 277,394 9804

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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273,860 - 9802 mRNA_1434 0.87 +0.2
274,360 + +0.3
274,903 - 9803 mRNA_1435 0.35 -0.9
275,258 + 9803 mRNA_1435 0.67 -2.8
275,909 + +1.7
275,928 + +0.5
275,942 + +1.7
275,971 + -2.2
276,261 - 9804 mRNA_1436 0.20 -0.2
276,518 - 9804 mRNA_1436 0.38 +0.5

Or see this region's nucleotide sequence