Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1440

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9807 and 9808 are separated by 198 nucleotides9808 and 9809 are separated by 300 nucleotides mRNA_1439: 9807 - K03544 clpX, CLPX ATP-dependent Clp protease ATP-binding subunit ClpX, at 281,812 to 284,553 9807 mRNA_1440: 9808 - Hypothetical Protein, at 284,752 to 285,459 9808 mRNA_1441: 9809 - K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic), at 285,760 to 287,814 9809

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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283,771 + 9807 mRNA_1439 0.71 +2.4
283,809 + 9807 mRNA_1439 0.73 +0.2
283,936 - 9807 mRNA_1439 0.77 -0.9
284,343 - +0.6
284,363 + +1.7
284,625 - +1.9
284,688 - +0.7
284,810 - +0.3
285,088 + 9808 mRNA_1440 0.47 -0.4
285,092 - 9808 mRNA_1440 0.48 +1.9
285,356 - 9808 mRNA_1440 0.85 +0.7
285,645 + +0.3
285,689 + -1.0
285,999 + 9809 mRNA_1441 0.12 +0.5
286,087 + 9809 mRNA_1441 0.16 -0.2
286,093 + 9809 mRNA_1441 0.16 +0.6
286,109 + 9809 mRNA_1441 0.17 +0.9
286,125 + 9809 mRNA_1441 0.18 -0.6
286,456 + 9809 mRNA_1441 0.34 -0.1

Or see this region's nucleotide sequence