Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1443

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_1443: 9811 - Hypothetical Protein, at 292,058 to 293,115 9811

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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291,074 + +2.2
291,085 - +1.6
291,098 - -0.9
291,109 + -0.3
291,141 - +0.7
291,142 - +0.9
291,187 + -1.7
291,228 + +0.9
291,252 - +2.5
291,323 - -0.6
291,346 - +1.2
291,372 + +0.6
291,372 - -0.7
291,372 - -1.7
291,386 - +1.4
291,386 - +0.8
291,391 - +1.9
291,410 + -0.5
291,808 - -1.1
291,816 - -0.5
292,406 - 9811 mRNA_1443 0.33 -1.3
292,552 + 9811 mRNA_1443 0.47 +0.6
292,655 - 9811 mRNA_1443 0.56 -1.2
292,804 + 9811 mRNA_1443 0.71 +1.1
292,832 - 9811 mRNA_1443 0.73 +0.2
292,843 - 9811 mRNA_1443 0.74 -0.3
292,848 - 9811 mRNA_1443 0.75 +0.1
292,892 - 9811 mRNA_1443 0.79 +0.5
292,927 - 9811 mRNA_1443 0.82 +1.5
292,966 - 9811 mRNA_1443 0.86 +0.6
292,967 + 9811 mRNA_1443 0.86 -1.3
292,972 - 9811 mRNA_1443 0.86 +0.2
292,976 + 9811 mRNA_1443 0.87 +0.5
292,993 - 9811 mRNA_1443 0.88 +1.0
293,004 + 9811 mRNA_1443 0.89 +0.9
293,111 - -1.6
293,134 - -0.2
293,154 + -0.2
293,270 + -0.3
293,273 - -0.3
293,279 - +0.5
293,282 - +1.0
293,289 - +2.7
293,289 - +0.1
293,289 - -0.1
293,292 + +0.2
293,293 + +0.1
293,307 + +0.5
293,315 - -0.4
293,316 + +1.0
293,321 + +0.4
293,324 + +1.0
293,326 - +0.3
293,450 - +0.1
293,704 - +0.1
294,007 + +0.1
294,008 - +0.1
294,019 + +1.4

Or see this region's nucleotide sequence