Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1446

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9814 and 9815 are separated by 687 nucleotides mRNA_1446: 9814 - BLAST Mucin-17 [Rhizoctonia solani], at 303,145 to 306,587 9814 mRNA_1447: 9815 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 307,275 to 311,482 9815

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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302,264 + +1.4
302,284 + +1.2
302,403 - +0.8
302,446 - +1.3
302,461 + +0.2
302,484 + +0.0
302,502 - -0.5
302,512 - +0.8
302,535 - +0.1
302,587 - -0.7
302,594 + -1.4
302,650 + +1.0
302,682 + -0.4
302,704 - +0.3
302,726 + +0.4
302,740 - -1.3
302,797 + -0.7
302,828 + -1.2
302,836 - +0.4
302,844 - +0.4
302,844 - +0.0
302,844 - +0.5
302,851 - +0.7
302,854 + +0.5
302,859 + -2.0
302,860 - +0.4
302,861 - -0.1
302,862 + +1.5
302,868 - -0.5
302,874 - +0.2
302,889 + +2.6
302,890 - -1.1
302,914 - +0.8
302,916 + -0.9
302,931 + +0.4
302,931 - +0.4
302,933 - -0.3
302,933 - +0.4
302,933 - +0.9
302,938 + +2.0
302,939 + +1.4
302,944 - +0.5
302,947 + -0.1
302,950 - +0.3
302,950 + -0.4
302,951 - -0.2
302,955 + +0.4
302,957 + +1.0
302,959 - +1.6
302,959 + +0.4
302,959 - +0.1
302,964 + +2.1
302,978 + +0.4
303,083 + +2.2
303,091 + -0.2
303,099 + +1.1
303,102 - +0.6
303,106 + +0.2
304,148 - 9814 mRNA_1446 0.29 +0.7
306,550 + +2.3
306,798 + +0.4
307,047 - -0.7
307,059 + +2.0
307,214 + +0.8
307,215 - +0.6
307,518 + +1.6

Or see this region's nucleotide sequence