Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1450

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9817 and 9818 are separated by 342 nucleotides9818 and 9819 are separated by 140 nucleotides mRNA_1449: 9817 - K03325 TC.ACR3 arsenite transporter, ACR3 family, at 315,530 to 317,378 9817 mRNA_1450: 9818 - K20826 RPAP1 RNA polymerase II-associated protein 1, at 317,721 to 321,691 9818 mRNA_1451: 9819 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 321,832 to 325,764 9819

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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316,827 + 9817 mRNA_1449 0.70 +1.7
316,952 - 9817 mRNA_1449 0.77 +0.3
316,957 + 9817 mRNA_1449 0.77 +0.0
316,977 + 9817 mRNA_1449 0.78 +1.6
316,980 + 9817 mRNA_1449 0.78 +0.9
316,980 + 9817 mRNA_1449 0.78 +0.0
317,144 + 9817 mRNA_1449 0.87 +1.0
317,264 - +0.5
317,266 + +0.3
317,284 + +0.3
317,305 - +0.4
317,403 - +0.5
317,414 + -0.7
317,421 + -0.1
317,423 - -0.9
317,432 + +1.5
317,432 + +1.0
317,434 + +0.6
317,449 + +0.4
317,451 - +0.5
317,452 + -0.9
317,488 - +0.2
317,502 - +0.1
317,534 + +0.4
317,553 + +0.2
317,555 + +1.6
317,557 - +1.0
317,561 + +0.9
317,563 + -1.1
317,683 - +0.8
321,083 - 9818 mRNA_1450 0.85 -1.5
321,146 - 9818 mRNA_1450 0.86 -0.4
321,152 - 9818 mRNA_1450 0.86 +0.3
321,153 + 9818 mRNA_1450 0.86 +1.6
321,644 - +2.0
321,860 + +0.4
321,903 - -0.1
322,279 - 9819 mRNA_1451 0.11 +1.0

Or see this region's nucleotide sequence