Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1475

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9842 and 9843 are separated by 478 nucleotides mRNA_1474: 9842 - Hypothetical Protein, at 388,451 to 391,356 9842 mRNA_1475: 9843 - K07374 TUBA tubulin alpha, at 391,835 to 393,525 9843

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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391,012 + 9842 mRNA_1474 0.88 -0.1
391,137 - +1.2
391,292 + +0.2
391,424 - +0.5
391,445 + +1.4
391,445 - +0.4
391,567 + +0.5
391,588 - +0.2
391,594 + +1.6
393,511 - -1.1
393,817 - +3.0
393,828 - +1.1
394,130 + -0.3
394,130 + +0.2
394,142 + +0.4
394,283 + -0.1
394,284 - +1.0
394,288 + +0.7
394,310 + +1.3
394,315 + +0.1
394,315 - -0.6
394,451 - +0.4
394,458 - -1.7
394,462 - +0.4
394,491 + -0.7

Or see this region's nucleotide sequence