Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1530

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9898 and 9899 are separated by 288 nucleotides mRNA_1530: 9898 - K15296 NAPA, SNAPA, SEC17 alpha-soluble NSF attachment protein, at 524,538 to 525,796 9898 mRNA_1531: 9899 - KOG1852 Cell cycle-associated protein, at 526,085 to 527,071 9899

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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523,632 - +0.4
523,800 - +0.7
524,103 - -1.7
525,271 + 9898 mRNA_1530 0.58 +2.2
526,439 - 9899 mRNA_1531 0.36 +2.1
526,464 + 9899 mRNA_1531 0.38 -0.8
526,573 + 9899 mRNA_1531 0.49 -0.3

Or see this region's nucleotide sequence