Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1602

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9969 and 9970 are separated by 277 nucleotides9970 and 9971 are separated by 492 nucleotides mRNA_1601: 9969 - HMMPfam-Protein of unknown function (DUF1682)-PF07946,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 694,292 to 695,992 9969 mRNA_1602: 9970 - HMMPfam-Protein of unknown function (DUF2013)-PF09431, at 696,270 to 698,823 9970 mRNA_1603: 9971 - KOG2948 Predicted metal-binding protein, at 699,316 to 700,594 9971

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
695,387 - 9969 mRNA_1601 0.64 -0.5
695,434 - 9969 mRNA_1601 0.67 +1.0
695,443 + 9969 mRNA_1601 0.68 +1.1
695,456 - 9969 mRNA_1601 0.68 +1.2
695,583 + 9969 mRNA_1601 0.76 -1.7
695,589 + 9969 mRNA_1601 0.76 +0.5
695,721 - 9969 mRNA_1601 0.84 +0.0
695,861 + +0.6
695,864 - +0.3
695,886 - +2.1
695,909 - +0.1
696,056 + +0.0
696,170 - +0.4
696,187 + +0.7
696,303 - +2.0
696,352 - +0.7
696,426 + +1.9
696,513 - +0.1
696,638 + 9970 mRNA_1602 0.14 +2.7
696,736 - 9970 mRNA_1602 0.18 +0.7
696,744 - 9970 mRNA_1602 0.19 +0.7
697,021 - 9970 mRNA_1602 0.29 +0.8
697,079 + 9970 mRNA_1602 0.32 +0.7
697,084 + 9970 mRNA_1602 0.32 +1.3
697,199 - 9970 mRNA_1602 0.36 +0.5
697,364 - 9970 mRNA_1602 0.43 +0.1
697,375 - 9970 mRNA_1602 0.43 +1.3
697,389 - 9970 mRNA_1602 0.44 +1.8
697,392 + 9970 mRNA_1602 0.44 +2.8
697,445 - 9970 mRNA_1602 0.46 +2.0
697,660 - 9970 mRNA_1602 0.54 +1.4
697,751 - 9970 mRNA_1602 0.58 +0.3
697,984 + 9970 mRNA_1602 0.67 +0.8
698,191 - 9970 mRNA_1602 0.75 +4.2
698,211 - 9970 mRNA_1602 0.76 -0.8
698,368 + 9970 mRNA_1602 0.82 +0.1
698,532 - 9970 mRNA_1602 0.89 +1.2
698,655 + +1.8
698,675 - +0.8
698,681 - +1.4
698,924 - +0.5
698,972 - -0.4
698,973 - +0.7
698,975 - +1.1
698,997 - -0.8
699,272 - +0.1

Or see this region's nucleotide sequence