Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1619

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9986 and 9987 are separated by 22 nucleotides9987 and 9988 are separated by 203 nucleotides mRNA_1618: 9986 - Hypothetical Protein, at 734,832 to 736,267 9986 mRNA_1619: 9987 - Hypothetical Protein, at 736,290 to 737,740 9987 mRNA_1620: 9988 - Hypothetical Protein, at 737,944 to 741,201 9988

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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736,071 + 9986 mRNA_1618 0.86 +3.4
736,348 + +0.9
736,354 + -0.7
736,627 - 9987 mRNA_1619 0.23 +0.6
736,661 - 9987 mRNA_1619 0.26 -1.1
736,692 - 9987 mRNA_1619 0.28 -0.5
737,059 + 9987 mRNA_1619 0.53 +0.5
737,069 + 9987 mRNA_1619 0.54 -0.1
737,082 + 9987 mRNA_1619 0.55 -0.2
737,202 - 9987 mRNA_1619 0.63 +1.4
737,213 - 9987 mRNA_1619 0.64 -0.6
737,647 + +0.6
737,657 + -1.8
737,790 + +2.3
737,801 - -0.3
737,804 - -0.5
737,809 - +0.1
737,809 + +0.0

Or see this region's nucleotide sequence