Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1634

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10001 and 10002 are separated by 179 nucleotides mRNA_1633: 10001 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 762,446 to 764,135 10001 mRNA_1634: 10002 - HMMPfam-alpha/beta hydrolase fold-PF07859,ProSitePatterns-Lipolytic enzymes G-D-X-G family, putative serine active site.-PS01174,SUPERFAMILY--SSF53474, at 764,315 to 766,210 10002

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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763,319 - 10001 mRNA_1633 0.52 +1.4
763,686 - 10001 mRNA_1633 0.73 -0.3
763,697 - 10001 mRNA_1633 0.74 +1.9
764,029 + +1.6
764,245 - -1.6
764,261 + -1.0
764,263 - -1.3
764,263 - -0.7
764,269 - +0.2
764,430 - -0.4
764,821 - 10002 mRNA_1634 0.27 -0.6
765,148 - 10002 mRNA_1634 0.44 -0.6
765,427 - 10002 mRNA_1634 0.59 -0.6
765,517 - 10002 mRNA_1634 0.63 +2.4
765,529 - 10002 mRNA_1634 0.64 -0.7
765,547 - 10002 mRNA_1634 0.65 +0.9
765,652 + 10002 mRNA_1634 0.71 -0.0
765,710 + 10002 mRNA_1634 0.74 +1.2
765,863 + 10002 mRNA_1634 0.82 +0.5
766,005 - 10002 mRNA_1634 0.89 +1.5
766,210 + +0.4
766,315 + -0.7
766,328 - -0.6
766,600 + -0.1
766,603 + +1.4
766,908 - +1.0
766,909 + +1.6
766,909 + +0.0
767,051 + +0.2
767,053 - -1.4
767,178 - +1.3
767,189 - -0.4

Or see this region's nucleotide sequence