Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1641

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10008 and 10009 are separated by 473 nucleotides10009 and 10010 are separated by 607 nucleotides mRNA_1640: 10008 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 783,774 to 785,106 10008 mRNA_1641: 10009 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 785,580 to 788,144 10009 mRNA_1642: 10010 - K03937 NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4, at 788,752 to 789,941 10010

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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784,734 + 10008 mRNA_1640 0.72 +2.1
784,854 + 10008 mRNA_1640 0.81 +1.9
784,903 + 10008 mRNA_1640 0.85 +1.8
785,028 + -0.0
785,170 - +1.8
785,232 + -0.6
785,462 + -0.1
785,505 + -0.5
786,056 + 10009 mRNA_1641 0.19 -0.5
786,491 + 10009 mRNA_1641 0.36 +0.5
786,496 - 10009 mRNA_1641 0.36 -0.9
786,917 - 10009 mRNA_1641 0.52 +0.5
787,258 + 10009 mRNA_1641 0.65 -1.5
787,532 - 10009 mRNA_1641 0.76 -0.5
787,821 - 10009 mRNA_1641 0.87 -0.7
788,709 + -0.0
788,710 + -0.7
788,831 - -0.1
788,866 + -0.6
788,890 + 10010 mRNA_1642 0.12 -0.1
788,971 - 10010 mRNA_1642 0.18 -1.1
788,989 - 10010 mRNA_1642 0.20 -1.0
788,990 - 10010 mRNA_1642 0.20 -1.1
788,998 + 10010 mRNA_1642 0.21 -1.4
789,136 + 10010 mRNA_1642 0.32 -1.1

Or see this region's nucleotide sequence