Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1645

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10012 and 10013 are separated by 176 nucleotides10013 and 10014 are separated by 334 nucleotides mRNA_1644: 10012 - K00253 IVD, ivd isovaleryl-CoA dehydrogenase, at 792,797 to 794,915 10012 mRNA_1645: 10013 - Hypothetical Protein, at 795,092 to 795,670 10013 mRNA_1646: 10014 - KOG2182 Hydrolytic enzymes of the alpha/beta hydrolase fold, at 796,005 to 798,167 10014

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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794,251 - 10012 mRNA_1644 0.69 -0.3
794,371 + 10012 mRNA_1644 0.74 -2.4
794,503 + 10012 mRNA_1644 0.81 +2.2
794,780 + +0.1
795,237 - 10013 mRNA_1645 0.25 +0.8
795,797 + +0.7
795,964 - -0.5
795,978 + +0.1
795,979 + -0.9
795,991 + +0.5
796,139 + -0.3
796,261 + 10014 mRNA_1646 0.12 -0.3
796,432 - 10014 mRNA_1646 0.20 -1.0
796,470 - 10014 mRNA_1646 0.21 -0.2

Or see this region's nucleotide sequence