Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1663

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10030 and 10031 are separated by 790 nucleotides10031 and 10032 are separated by 427 nucleotides mRNA_1662: 10030 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 836,200 to 837,347 10030 mRNA_1663: 10031 - ProSiteProfiles-Gram-positive cocci surface proteins LPxTG motif profile.-PS50847, at 838,138 to 838,939 10031 mRNA_1664: 10032 - Hypothetical Protein, at 839,367 to 840,051 10032

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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837,340 - -0.5
837,461 + -2.0
837,669 + -0.8
837,882 + +0.8
839,064 - +0.0
839,078 - +2.6
839,433 + -0.4
839,460 + 10032 mRNA_1664 0.14 -0.4
839,487 - 10032 mRNA_1664 0.18 -0.2
839,690 + 10032 mRNA_1664 0.47 +0.4
839,700 + 10032 mRNA_1664 0.49 -0.6
839,860 - 10032 mRNA_1664 0.72 +0.9

Or see this region's nucleotide sequence