Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1681

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10048 and 10049 are separated by 491 nucleotides mRNA_1680: 10048 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 876,384 to 878,826 10048 mRNA_1681: 10049 - K03126 TAF12 transcription initiation factor TFIID subunit 12, at 879,318 to 879,933 10049

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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878,533 - 10048 mRNA_1680 0.88 +0.6
878,565 + 10048 mRNA_1680 0.89 -0.5
878,565 + 10048 mRNA_1680 0.89 +1.9
878,588 - +0.6
878,742 + +1.2
878,857 - +0.3
879,009 + -0.2
879,132 + -0.1
879,135 + +0.8
879,274 + +0.8

Or see this region's nucleotide sequence