Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1706

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10074 and 10075 overlap by 4 nucleotides mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1,191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1,188 to 2,835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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26 + -0.6
27 + +0.3
28 + -0.2
31 + -0.6
31 + +0.0
41 + +0.1
66 + +1.5
72 - +0.5
72 - +0.8
93 + +2.2
104 + +0.4
105 + -0.2
108 + +0.1
120 - +0.3
128 + +1.5
135 - +0.2
136 + +0.2
136 - +0.6
137 - -0.5
137 - -0.5
138 + +0.3
139 + -0.9
141 - -0.3
150 - -0.3
151 - +0.1
155 + +1.4
155 + +0.8
156 + -0.1
158 + +1.3
173 - +1.0
175 + +0.3
180 - +0.5
215 + -0.3
220 - -0.6
234 + +0.2
254 - +0.1
283 + +1.4
304 + +1.0
322 + -0.3
324 + -0.2
427 + +1.3
453 + 10074 mRNA_1706 0.13 -0.2
465 - 10074 mRNA_1706 0.14 -0.8
482 + 10074 mRNA_1706 0.16 -1.1
493 - 10074 mRNA_1706 0.18 +1.2
647 + 10074 mRNA_1706 0.36 -0.4
683 - 10074 mRNA_1706 0.40 -0.6
809 + 10074 mRNA_1706 0.55 +2.6
842 - 10074 mRNA_1706 0.59 -0.2
844 + 10074 mRNA_1706 0.59 +0.9
848 - 10074 mRNA_1706 0.59 -0.6
902 + 10074 mRNA_1706 0.66 -0.2
949 - 10074 mRNA_1706 0.71 -0.9
949 - 10074 mRNA_1706 0.71 +0.2
950 + 10074 mRNA_1706 0.71 +1.2
974 - 10074 mRNA_1706 0.74 +0.7
1,016 + 10074 mRNA_1706 0.79 +1.4
1,065 + 10074 mRNA_1706 0.85 +0.0
1,118 + -0.1
1,142 + -0.1
1,155 + +0.0
1,272 - +0.1
1,281 + +0.2
1,573 + 10075 mRNA_1707 0.23 -0.0
1,625 + 10075 mRNA_1707 0.27 -0.2
1,625 + 10075 mRNA_1707 0.27 +1.2
1,628 + 10075 mRNA_1707 0.27 +0.6
1,646 + 10075 mRNA_1707 0.28 -0.3
1,649 - 10075 mRNA_1707 0.28 -0.6
1,680 + 10075 mRNA_1707 0.30 -0.9
1,781 + 10075 mRNA_1707 0.36 +0.4
1,926 + 10075 mRNA_1707 0.45 -0.2
1,996 + 10075 mRNA_1707 0.49 +0.4
2,005 - 10075 mRNA_1707 0.50 -0.2
2,010 - 10075 mRNA_1707 0.50 -0.4
2,033 + 10075 mRNA_1707 0.51 -0.1
2,068 + 10075 mRNA_1707 0.53 -1.3
2,076 + 10075 mRNA_1707 0.54 +0.3

Or see this region's nucleotide sequence