Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1722

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10089 and 10090 are separated by 540 nucleotides mRNA_1721: 10089 - K11483 HOS2 histone deacetylase HOS2, at 32,428 to 34,334 10089 mRNA_1722: 10090 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 34,875 to 37,390 10090

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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34,606 + -0.1
34,704 + +0.2
34,710 + -0.8
34,717 + +0.3
34,753 - +1.2
34,868 + +1.4
34,948 - +0.0
35,013 - +1.0
35,040 + +0.2
35,159 - 10090 mRNA_1722 0.11 +2.0
35,168 + 10090 mRNA_1722 0.12 -2.1
35,466 + 10090 mRNA_1722 0.23 -0.1
35,672 + 10090 mRNA_1722 0.32 -0.3
35,841 + 10090 mRNA_1722 0.38 +0.3
36,014 + 10090 mRNA_1722 0.45 -0.3
36,174 - 10090 mRNA_1722 0.52 +0.2
36,204 + 10090 mRNA_1722 0.53 +0.8
36,285 + 10090 mRNA_1722 0.56 +0.0
36,292 + 10090 mRNA_1722 0.56 +0.7
36,324 + 10090 mRNA_1722 0.58 +1.3
36,375 + 10090 mRNA_1722 0.60 +0.1
36,465 + 10090 mRNA_1722 0.63 +2.3
36,602 + 10090 mRNA_1722 0.69 +0.6
36,611 + 10090 mRNA_1722 0.69 -0.9
36,720 - 10090 mRNA_1722 0.73 +0.2
36,746 + 10090 mRNA_1722 0.74 +1.5
36,965 + 10090 mRNA_1722 0.83 +0.9
37,032 - 10090 mRNA_1722 0.86 +2.0
37,050 - 10090 mRNA_1722 0.86 +0.4
37,145 + +2.4
37,166 + +0.9
37,194 - +1.6
37,194 + +0.3
37,356 + +0.2
37,457 + +0.9
37,470 + +1.3
37,473 + +1.3
37,476 + +0.7
37,481 + +0.2
37,501 + +2.4
37,595 + +2.1
37,628 + -0.2
37,631 + -0.2
37,660 + +0.1
37,703 - +1.7
37,717 - +0.5
37,735 - +2.2
37,831 - +1.3
37,837 + +0.7
37,921 - +0.4
37,933 - +0.5
37,934 + -1.6
37,934 + +0.3
37,938 + +0.6
37,950 - +0.4
37,951 + +1.2
37,984 - +0.5
38,063 + +0.8
38,063 - +0.3
38,074 - +1.3
38,075 - +0.3
38,083 + +1.7
38,091 - +0.1
38,140 - -0.0
38,248 - +0.2
38,249 - -0.6
38,366 + +1.0
38,384 + +0.5

Or see this region's nucleotide sequence